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A research team from the Department of Pharmacology and Pharmacy at the LKS Faculty of Medicine of the University of Hong Kong (HKUMed) has developed an innovative AI-based cardiovascular risk prediction tool, called CardiOmicScore. With a single blood test, the system can accurately forecast the future risk of six major cardiovascular diseases (CVDs): coronary artery disease, stroke, heart failure, atrial fibrillation, peripheral artery disease and venous thromboembolism. It can also provide early warning signals up to 15 years before clinical onset. The findings were published in Nature Communications [link to the publication].

AI-based multiomics integration reflects the body’s real-time health status
CVDs remain the leading cause of death worldwide, accounting approximately 19.8 million fatalities in 2022 alone. In routine health assessments, physicians typically evaluate cardiovascular risk based on age, blood pressure, smoking and other conventional clinical indicators. However, these measures often fail to capture subtle and early biological changes before the disease becomes clinically apparent, leading to many patients missing the optimal window for preventive intervention. Although polygenic risk scores have become popular in recent years, genetic predisposition is largely fixed at birth and does not change over time. Consequently, polygenic risk scores cannot reflect the immediate impact on health conditions resulting from  lifestyle or environmental changes. This creates an urgent need for tools that can capture a person’s current biological state and provide accurate, early warnings for CVDs.

To address this problem, the HKUMed research team applied deep learning techniques to integrate multiomics data, including genomics, metabolomics and proteomics, to develop the CardiOmicScore tool. The study was based on large-scale population data from the UK Biobank, analysing 2,920 circulating proteins and 168 metabolites measured from blood samples. These molecular signals act as ‘real-time recorders’ of the body, sensitively reflecting subtle changes in the immune system, metabolism, and vascular health.

Professor Zhang Qingpeng, Associate Professor in the Department of Pharmacology and Pharmacy at HKUMed, explained, ‘Genes determine where we start—they define our baseline health risk. However, proteins and metabolites reflect our current physical health. Our AI tool is designed to decode these complex molecular signals, enabling doctors and patients to identify risks much earlier, which can potentially change the trajectory of disease through timely lifestyle modifications and early prevention.’

Accurate prediction of six major cardiovascular diseases with 15‑year advance warning in high-risk groups
The results showed that CardiOmicScore transforms complex multiomics measurements into personalised risk scores with substantially improved predictive performance compared with conventional polygenic risk scores. When combined with clinical information such as age and gender, the model significantly enhanced the risk prediction accuracy of six common CVDs and can even flag elevated risk up to 15 years before symptoms appear.

This study marks a shift in precision medicine from a static, gene-centric paradigm towards a more dynamic, multiomics-based approach. In the future, a small-volume blood sample may be sufficient to generate a comprehensive cardiovascular risk profile for multiple diseases. Professor Zhang added, ‘We aim to leverage technology to identify and prevent diseases before they develop. By shifting health management from reactive treatment to proactive prediction and intervention, we aim to create a lasting impact for both public health and individual patient care.’

About the research team
The study was led by Professor Zhang Qingpeng, Associate Professor in the Department of Pharmacology and Pharmacy, HKUMed, and the HKU Musketeers Foundation Institute of Data Science (IDS). The first author is Luo Yan from the HKU IDS.

Media enquiries
Please contact LKS Faculty of Medicine of The University of Hong Kong by email (medmedia@hku.hk).